J4_8Y39_008

3D structure

PDB id

8Y39 (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryo-EM structure of Staphylococcus aureus(ATCC 29213) 70S ribosome in complex with MCX-190.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUGC*GCGG*UCCUAAGGUAG*CGAAAG

Length

25 nucleotides

Bulged bases

8Y39|1|A|A|1998

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8Y39|1|A|C|1860
8Y39|1|A|U|1861
8Y39|1|A|G|1862
8Y39|1|A|C|1863
*
8Y39|1|A|G|1931
8Y39|1|A|C|1932
8Y39|1|A|G|1933
8Y39|1|A|G|1934
*
8Y39|1|A|U|1950
8Y39|1|A|C|1951
8Y39|1|A|C|1952
8Y39|1|A|U|1953
8Y39|1|A|A|1954
8Y39|1|A|A|1955
8Y39|1|A|G|1956
8Y39|1|A|G|1957
8Y39|1|A|U|1958
8Y39|1|A|A|1959
8Y39|1|A|G|1960
*
8Y39|1|A|C|1994
8Y39|1|A|G|1995
8Y39|1|A|A|1996
8Y39|1|A|A|1997
8Y39|1|A|A|1998
8Y39|1|A|G|1999

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

Large ribosomal subunit protein uL2

Chain a

Small subunit ribosomal RNA; SSU rRNA