J4_8Y39_009

3D structure

PDB id

8Y39 (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryo-EM structure of Staphylococcus aureus(ATCC 29213) 70S ribosome in complex with MCX-190.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CAAAGG*CUUGAC*GGG*CGG

Length

18 nucleotides

Bulged bases

8Y39|1|A|A|2315

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8Y39|1|A|C|2312
8Y39|1|A|A|2313
8Y39|1|A|A|2314
8Y39|1|A|A|2315
8Y39|1|A|G|2316
8Y39|1|A|G|2317
*
8Y39|1|A|C|2369
8Y39|1|A|U|2370
8Y39|1|A|U|2371
8Y39|1|A|G|2372
8Y39|1|A|A|2373
8Y39|1|A|C|2374
*
8Y39|1|A|G|2397
8Y39|1|A|G|2398
8Y39|1|A|G|2399
*
8Y39|1|A|C|2408
8Y39|1|A|G|2409
8Y39|1|A|G|2410

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 1

Large ribosomal subunit protein bL33B

Chain 3

Large ribosomal subunit protein bL35

Chain U

Large ribosomal subunit protein bL27