J4_8Y39_011

3D structure

PDB id

8Y39 (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryo-EM structure of Staphylococcus aureus(ATCC 29213) 70S ribosome in complex with MCX-190.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAGUAACAC*GCU*AUAG*CC

Length

18 nucleotides

Bulged bases

8Y39|1|a|C|120

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8Y39|1|a|G|114
8Y39|1|a|A|115
8Y39|1|a|G|116
8Y39|1|a|U|117
8Y39|1|a|A|118
8Y39|1|a|A|119
8Y39|1|a|C|120
8Y39|1|a|A|121
8Y39|1|a|C|122
*
8Y39|1|a|G|246
8Y39|1|a|C|247
8Y39|1|a|U|248
*
8Y39|1|a|A|294
8Y39|1|a|U|295
8Y39|1|a|A|296
8Y39|1|a|G|297
*
8Y39|1|a|C|319
8Y39|1|a|C|320

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain l

Small ribosomal subunit protein uS12

Chain p

Small ribosomal subunit protein bS16

Chain q

Small ribosomal subunit protein uS17