J4_8Y39_012

3D structure

PDB id

8Y39 (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryo-EM structure of Staphylococcus aureus(ATCC 29213) 70S ribosome in complex with MCX-190.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAC*GAUAAUAU*AAGUGAAAG*UCAC

Length

24 nucleotides

Bulged bases

8Y39|1|a|U|183, 8Y39|1|a|A|211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8Y39|1|a|G|142
8Y39|1|a|A|143
8Y39|1|a|C|144
*
8Y39|1|a|G|178
8Y39|1|a|A|179
8Y39|1|a|U|180
8Y39|1|a|A|181
8Y39|1|a|A|182
8Y39|1|a|U|183
8Y39|1|a|A|184
8Y39|1|a|U|185
*
8Y39|1|a|A|205
8Y39|1|a|A|206
8Y39|1|a|G|207
8Y39|1|a|U|208
8Y39|1|a|G|209
8Y39|1|a|A|210
8Y39|1|a|A|211
8Y39|1|a|A|212
8Y39|1|a|G|213
*
8Y39|1|a|U|226
8Y39|1|a|C|227
8Y39|1|a|A|228
8Y39|1|a|C|229

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain p

Small ribosomal subunit protein bS16

Chain t

Small ribosomal subunit protein bS20