J4_8Y39_013
3D structure
- PDB id
- 8Y39 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- cryo-EM structure of Staphylococcus aureus(ATCC 29213) 70S ribosome in complex with MCX-190.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GCG*CGAAAG*CCGUAAACGAUG*CC
- Length
- 23 nucleotides
- Bulged bases
- 8Y39|1|a|C|584, 8Y39|1|a|A|823, 8Y39|1|a|C|825, 8Y39|1|a|A|827
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8Y39_013 not in the Motif Atlas
- Homologous match to J4_5J7L_003
- Geometric discrepancy: 0.075
- The information below is about J4_5J7L_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.6
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
8Y39|1|a|G|583
8Y39|1|a|C|584
8Y39|1|a|G|585
*
8Y39|1|a|C|772
8Y39|1|a|G|773
8Y39|1|a|A|774
8Y39|1|a|A|775
8Y39|1|a|A|776
8Y39|1|a|G|777
*
8Y39|1|a|C|818
8Y39|1|a|C|819
8Y39|1|a|G|820
8Y39|1|a|U|821
8Y39|1|a|A|822
8Y39|1|a|A|823
8Y39|1|a|A|824
8Y39|1|a|C|825
8Y39|1|a|G|826
8Y39|1|a|A|827
8Y39|1|a|U|828
8Y39|1|a|G|829
*
8Y39|1|a|C|888
8Y39|1|a|C|889
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain h
- Small ribosomal subunit protein uS8
- Chain l
- Small ribosomal subunit protein uS12
- Chain o
- Small ribosomal subunit protein uS15
- Chain q
- Small ribosomal subunit protein uS17
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