J4_8Y39_014
3D structure
- PDB id
- 8Y39 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- cryo-EM structure of Staphylococcus aureus(ATCC 29213) 70S ribosome in complex with MCX-190.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CAAGCGGUGGA*UAC*GGAAUCGCUAGUAA*UGAAUACG
- Length
- 36 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8Y39|1|a|C|945
8Y39|1|a|A|946
8Y39|1|a|A|947
8Y39|1|a|G|948
8Y39|1|a|C|949
8Y39|1|a|G|950
8Y39|1|a|G|951
8Y39|1|a|U|952
8Y39|1|a|G|953
8Y39|1|a|G|954
8Y39|1|a|A|955
*
8Y39|1|a|U|1245
8Y39|1|a|A|1246
8Y39|1|a|C|1247
*
8Y39|1|a|G|1347
8Y39|1|a|G|1348
8Y39|1|a|A|1349
8Y39|1|a|A|1350
8Y39|1|a|U|1351
8Y39|1|a|C|1352
8Y39|1|a|G|1353
8Y39|1|a|C|1354
8Y39|1|a|U|1355
8Y39|1|a|A|1356
8Y39|1|a|G|1357
8Y39|1|a|U|1358
8Y39|1|a|A|1359
8Y39|1|a|A|1360
*
8Y39|1|a|U|1382
8Y39|1|a|G|1383
8Y39|1|a|A|1384
8Y39|1|a|A|1385
8Y39|1|a|U|1386
8Y39|1|a|A|1387
8Y39|1|a|C|1388
8Y39|1|a|G|1389
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain g
- Small ribosomal subunit protein uS7
- Chain i
- Small ribosomal subunit protein uS9
- Chain m
- Small ribosomal subunit protein uS13
Coloring options: