J4_8YDE_012
3D structure
- PDB id
- 8YDE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli transcription translation coupling complex in TTC-B state 1 (subclass 3) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5 Å
Loop
- Sequence
- GCG*CGAAAG*CCGUAAACGAUG*CC
- Length
- 23 nucleotides
- Bulged bases
- 8YDE|1|3|C|576, 8YDE|1|3|A|815, 8YDE|1|3|C|817, 8YDE|1|3|A|819
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8YDE|1|3|G|575
8YDE|1|3|C|576
8YDE|1|3|G|577
*
8YDE|1|3|C|764
8YDE|1|3|G|765
8YDE|1|3|A|766
8YDE|1|3|A|767
8YDE|1|3|A|768
8YDE|1|3|G|769
*
8YDE|1|3|C|810
8YDE|1|3|C|811
8YDE|1|3|G|812
8YDE|1|3|U|813
8YDE|1|3|A|814
8YDE|1|3|A|815
8YDE|1|3|A|816
8YDE|1|3|C|817
8YDE|1|3|G|818
8YDE|1|3|A|819
8YDE|1|3|U|820
8YDE|1|3|G|821
*
8YDE|1|3|C|879
8YDE|1|3|C|880
Current chains
- Chain 3
- 16S rRNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain M
- 30S ribosomal protein S8
- Chain Q
- 30S ribosomal protein S12
- Chain T
- 30S ribosomal protein S15
- Chain V
- 30S ribosomal protein S17
- Chain Z
- 30S ribosomal protein S21
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