J4_8YDF_001
3D structure
- PDB id
- 8YDF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli transcription translation coupling complex in TTC-B state 1 (subclass 2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.6 Å
Loop
- Sequence
- CC*GAGUAG*UGAAUAUG*CAAG
- Length
- 20 nucleotides
- Bulged bases
- 8YDF|1|1|U|405
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8YDF|1|1|C|268
8YDF|1|1|C|269
*
8YDF|1|1|G|370
8YDF|1|1|A|371
8YDF|1|1|G|372
8YDF|1|1|U|373
8YDF|1|1|A|374
8YDF|1|1|G|375
*
8YDF|1|1|U|399
8YDF|1|1|G|400
8YDF|1|1|A|401
8YDF|1|1|A|402
8YDF|1|1|U|403
8YDF|1|1|A|404
8YDF|1|1|U|405
8YDF|1|1|G|406
*
8YDF|1|1|C|421
8YDF|1|1|A|422
8YDF|1|1|A|423
8YDF|1|1|G|424
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain g
- 50S ribosomal protein L9
- Chain x
- 50S ribosomal protein L28
Coloring options: