J4_8YDF_002
3D structure
- PDB id
- 8YDF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli transcription translation coupling complex in TTC-B state 1 (subclass 2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.6 Å
Loop
- Sequence
- CAAG*CGAAG*CGAG*CGUUAAG
- Length
- 20 nucleotides
- Bulged bases
- 8YDF|1|1|A|654
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8YDF|1|1|C|601
8YDF|1|1|A|602
8YDF|1|1|A|603
8YDF|1|1|G|604
*
8YDF|1|1|C|624
8YDF|1|1|G|625
8YDF|1|1|A|626
8YDF|1|1|A|627
8YDF|1|1|G|628
*
8YDF|1|1|C|635
8YDF|1|1|G|636
8YDF|1|1|A|637
8YDF|1|1|G|638
*
8YDF|1|1|C|650
8YDF|1|1|G|651
8YDF|1|1|U|652
8YDF|1|1|U|653
8YDF|1|1|A|654
8YDF|1|1|A|655
8YDF|1|1|G|656
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain E
- 50S ribosomal protein L35
- Chain d
- 50S ribosomal protein L4
- Chain l
- 50S ribosomal protein L15
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