J4_8YDF_004
3D structure
- PDB id
- 8YDF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli transcription translation coupling complex in TTC-B state 1 (subclass 2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.6 Å
Loop
- Sequence
- GGUUC*GGUGAG*CU*AAUCGUAC
- Length
- 21 nucleotides
- Bulged bases
- 8YDF|1|1|G|1341
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8YDF|1|1|G|1310
8YDF|1|1|G|1311
8YDF|1|1|U|1312
8YDF|1|1|U|1313
8YDF|1|1|C|1314
*
8YDF|1|1|G|1338
8YDF|1|1|G|1339
8YDF|1|1|U|1340
8YDF|1|1|G|1341
8YDF|1|1|A|1342
8YDF|1|1|G|1343
*
8YDF|1|1|C|1404
8YDF|1|1|U|1405
*
8YDF|1|1|A|1597
8YDF|1|1|A|1598
8YDF|1|1|U|1599
8YDF|1|1|C|1600
8YDF|1|1|G|1601
8YDF|1|1|U|1602
8YDF|1|1|A|1603
8YDF|1|1|C|1604
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain D
- 50S ribosomal protein L34
- Chain t
- 50S ribosomal protein L23
Coloring options: