J4_8YDF_009

3D structure

PDB id

8YDF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-B state 1 (subclass 2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GGGC*GAC*GGAAG*UGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8YDF|1|1|G|2643
8YDF|1|1|G|2644
8YDF|1|1|G|2645
8YDF|1|1|C|2646
*
8YDF|1|1|G|2674
8YDF|1|1|A|2675
8YDF|1|1|C|2676
*
8YDF|1|1|G|2731
8YDF|1|1|G|2732
8YDF|1|1|A|2733
8YDF|1|1|A|2734
8YDF|1|1|G|2735
*
8YDF|1|1|U|2769
8YDF|1|1|G|2770
8YDF|1|1|C|2771

Current chains

Chain 1

23S rRNA

Nearby chains

Chain c

50S ribosomal protein L3

Chain j

50S ribosomal protein L13

Chain k

50S ribosomal protein L14