J4_8YDF_010
3D structure
- PDB id
- 8YDF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli transcription translation coupling complex in TTC-B state 1 (subclass 2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.6 Å
Loop
- Sequence
- GAGUAAUG*UG*CUAG*CC
- Length
- 16 nucleotides
- Bulged bases
- 8YDF|1|3|U|121
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8YDF|1|3|G|115
8YDF|1|3|A|116
8YDF|1|3|G|117
8YDF|1|3|U|118
8YDF|1|3|A|119
8YDF|1|3|A|120
8YDF|1|3|U|121
8YDF|1|3|G|122
*
8YDF|1|3|U|239
8YDF|1|3|G|240
*
8YDF|1|3|C|286
8YDF|1|3|U|287
8YDF|1|3|A|288
8YDF|1|3|G|289
*
8YDF|1|3|C|311
8YDF|1|3|C|312
Current chains
- Chain 3
- 16S rRNA
Nearby chains
- Chain U
- 30S ribosomal protein S16
- Chain V
- 30S ribosomal protein S17
Coloring options: