J4_8YDF_015
3D structure
- PDB id
- 8YDF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli transcription translation coupling complex in TTC-B state 1 (subclass 2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.6 Å
Loop
- Sequence
- GUGG*CGUC*GAAGGUCGUCGG*CCGGCC
- Length
- 26 nucleotides
- Bulged bases
- 8YDF|1|7|U|8, 8YDF|1|7|U|47, 8YDF|1|7|C|48
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8YDF|1|7|G|7
8YDF|1|7|U|8
8YDF|1|7|G|9
8YDF|1|7|G|10
*
8YDF|1|7|C|25
8YDF|1|7|G|26
8YDF|1|7|U|27
8YDF|1|7|C|28
*
8YDF|1|7|G|42
8YDF|1|7|A|43
8YDF|1|7|A|44
8YDF|1|7|G|45
8YDF|1|7|G|46
8YDF|1|7|U|47
8YDF|1|7|C|48
8YDF|1|7|G|49
8YDF|1|7|U|50
8YDF|1|7|C|51
8YDF|1|7|G|52
8YDF|1|7|G|53
*
8YDF|1|7|C|61
8YDF|1|7|C|62
8YDF|1|7|G|63
8YDF|1|7|G|64
8YDF|1|7|C|65
8YDF|1|7|C|66
Current chains
- Chain 7
- tRNA(fMet)
Nearby chains
- Chain 3
- Small subunit ribosomal RNA; SSU rRNA
- Chain 6
- Transfer RNA; tRNA
- Chain C
- 50S ribosomal protein L33
- Chain L
- 30S ribosomal protein S7
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