J4_8YDI_004

3D structure

PDB id

8YDI (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-P state 1 (subclass 2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

8YDI|1|1|G|1341

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8YDI|1|1|G|1310
8YDI|1|1|G|1311
8YDI|1|1|U|1312
8YDI|1|1|U|1313
8YDI|1|1|C|1314
*
8YDI|1|1|G|1338
8YDI|1|1|G|1339
8YDI|1|1|U|1340
8YDI|1|1|G|1341
8YDI|1|1|A|1342
8YDI|1|1|G|1343
*
8YDI|1|1|C|1404
8YDI|1|1|U|1405
*
8YDI|1|1|A|1597
8YDI|1|1|A|1598
8YDI|1|1|U|1599
8YDI|1|1|C|1600
8YDI|1|1|G|1601
8YDI|1|1|U|1602
8YDI|1|1|A|1603
8YDI|1|1|C|1604

Current chains

Chain 1

23S rRNA

Nearby chains

Chain D

50S ribosomal protein L34

Chain t

50S ribosomal protein L23