J4_8YDI_013

3D structure

PDB id

8YDI (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-P state 1 (subclass 2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

AUAG*CAG*CGUGUCC*GU

Length

16 nucleotides

Bulged bases

8YDI|1|5|U|47, 8YDI|1|5|C|48

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8YDI|1|5|A|7
8YDI|1|5|U|8
8YDI|1|5|A|9
8YDI|1|5|G|10
*
8YDI|1|5|C|25
8YDI|1|5|A|26
8YDI|1|5|G|27
*
8YDI|1|5|C|43
8YDI|1|5|G|44
8YDI|1|5|U|45
8YDI|1|5|G|46
8YDI|1|5|U|47
8YDI|1|5|C|48
8YDI|1|5|C|49
*
8YDI|1|5|G|65
8YDI|1|5|U|66

Current chains

Chain 5

tRNA(Phe)

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain 3

Small subunit ribosomal RNA; SSU rRNA

Chain h

viomycin