J4_8YDJ_005

3D structure

PDB id

8YDJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-P containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

5.1 Å

Loop

Sequence

UC*GGUGAG*CU*AAUCGUA

Length

17 nucleotides

Bulged bases

8YDJ|1|1|G|1341

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8YDJ|1|1|U|1313
8YDJ|1|1|C|1314
*
8YDJ|1|1|G|1338
8YDJ|1|1|G|1339
8YDJ|1|1|U|1340
8YDJ|1|1|G|1341
8YDJ|1|1|A|1342
8YDJ|1|1|G|1343
*
8YDJ|1|1|C|1404
8YDJ|1|1|U|1405
*
8YDJ|1|1|A|1597
8YDJ|1|1|A|1598
8YDJ|1|1|U|1599
8YDJ|1|1|C|1600
8YDJ|1|1|G|1601
8YDJ|1|1|U|1602
8YDJ|1|1|A|1603

Current chains

Chain 1

23S rRNA

Nearby chains

Chain D

50S ribosomal protein L34

Chain t

50S ribosomal protein L23