J4_8YDJ_008
3D structure
- PDB id
- 8YDJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli transcription translation coupling complex in TTC-P containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.1 Å
Loop
- Sequence
- CUG*CG*CCUAAGGUAG*CGAAUG
- Length
- 21 nucleotides
- Bulged bases
- 8YDJ|1|1|U|1926, 8YDJ|1|1|U|1971
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8YDJ|1|1|C|1833
8YDJ|1|1|U|1834
8YDJ|1|1|G|1835
*
8YDJ|1|1|C|1905
8YDJ|1|1|G|1906
*
8YDJ|1|1|C|1924
8YDJ|1|1|C|1925
8YDJ|1|1|U|1926
8YDJ|1|1|A|1927
8YDJ|1|1|A|1928
8YDJ|1|1|G|1929
8YDJ|1|1|G|1930
8YDJ|1|1|U|1931
8YDJ|1|1|A|1932
8YDJ|1|1|G|1933
*
8YDJ|1|1|C|1967
8YDJ|1|1|G|1968
8YDJ|1|1|A|1969
8YDJ|1|1|A|1970
8YDJ|1|1|U|1971
8YDJ|1|1|G|1972
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain 3
- Small subunit ribosomal RNA; SSU rRNA
- Chain 6
- Transfer RNA; tRNA
- Chain b
- 50S ribosomal protein L2
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