J4_8YDJ_010
3D structure
- PDB id
- 8YDJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli transcription translation coupling complex in TTC-P containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.1 Å
Loop
- Sequence
- GGGC*GAC*GGAAG*UGC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8YDJ|1|1|G|2643
8YDJ|1|1|G|2644
8YDJ|1|1|G|2645
8YDJ|1|1|C|2646
*
8YDJ|1|1|G|2674
8YDJ|1|1|A|2675
8YDJ|1|1|C|2676
*
8YDJ|1|1|G|2731
8YDJ|1|1|G|2732
8YDJ|1|1|A|2733
8YDJ|1|1|A|2734
8YDJ|1|1|G|2735
*
8YDJ|1|1|U|2769
8YDJ|1|1|G|2770
8YDJ|1|1|C|2771
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain c
- 50S ribosomal protein L3
- Chain j
- 50S ribosomal protein L13
- Chain k
- 50S ribosomal protein L14
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