J4_8YLD_004

3D structure

PDB id

8YLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUAUG*CGUC*GAG*CGUGUG

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8YLD_004 not in the Motif Atlas

Homologous match to J4_8C3A_002

Geometric discrepancy: 0.1808

The information below is about J4_8C3A_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8YLD|1|A|C|185
8YLD|1|A|U|186
8YLD|1|A|A|187
8YLD|1|A|U|188
8YLD|1|A|G|189
*
8YLD|1|A|C|205
8YLD|1|A|G|206
8YLD|1|A|U|207
8YLD|1|A|C|208
*
8YLD|1|A|G|212
8YLD|1|A|A|213
8YLD|1|A|G|214
*
8YLD|1|A|C|226
8YLD|1|A|G|227
8YLD|1|A|U|228
8YLD|1|A|G|229
8YLD|1|A|U|230
8YLD|1|A|G|231

Current chains

Chain A

25S rRNA

Nearby chains

Chain F

Large ribosomal subunit protein uL4A

Chain a

Large ribosomal subunit protein uL24A