J4_8YLD_008
3D structure
- PDB id
- 8YLD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CUAAGG*CUUGAUUU*AAACC*GUG
- Length
- 22 nucleotides
- Bulged bases
- 8YLD|1|A|A|2657
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8YLD|1|A|C|2654
8YLD|1|A|U|2655
8YLD|1|A|A|2656
8YLD|1|A|A|2657
8YLD|1|A|G|2658
8YLD|1|A|G|2659
*
8YLD|1|A|C|2711
8YLD|1|A|U|2712
8YLD|1|A|U|2713
8YLD|1|A|G|2714
8YLD|1|A|A|2715
8YLD|1|A|U|2716
8YLD|1|A|U|2717
8YLD|1|A|U|2718
*
8YLD|1|A|A|2738
8YLD|1|A|A|2739
8YLD|1|A|A|2740
8YLD|1|A|C|2741
8YLD|1|A|C|2742
*
8YLD|1|A|G|2751
8YLD|1|A|U|2752
8YLD|1|A|G|2753
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain G
- Large ribosomal subunit protein uL18
- Chain S
- Large ribosomal subunit protein eL18A
- Chain V
- Large ribosomal subunit protein eL21A
- Chain d
- Large ribosomal subunit protein eL29
- Chain q
- Large ribosomal subunit protein eL42A
Coloring options: