J4_8YLD_011

3D structure

PDB id

8YLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUGAC*GCGC*GAUGUCC*GC

Length

18 nucleotides

Bulged bases

8YLD|1|t|U|8, 8YLD|1|t|U|47, 8YLD|1|t|C|48

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8YLD|1|t|G|7
8YLD|1|t|U|8
8YLD|1|t|G|9
8YLD|1|t|A|10
8YLD|1|t|C|11
*
8YLD|1|t|G|24
8YLD|1|t|C|25
8YLD|1|t|G|26
8YLD|1|t|C|27
*
8YLD|1|t|G|43
8YLD|1|t|A|44
8YLD|1|t|U|45
8YLD|1|t|G|46
8YLD|1|t|U|47
8YLD|1|t|C|48
8YLD|1|t|C|49
*
8YLD|1|t|G|65
8YLD|1|t|C|66

Current chains

Chain t

tRNA

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain q

Large ribosomal subunit protein eL42A