J4_8YLD_012
3D structure
- PDB id
- 8YLD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GACUG*CAUAG*UGAUUU*AUUAAC
- Length
- 22 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8YLD|1|A|G|2130
8YLD|1|A|A|2131
8YLD|1|A|C|2132
8YLD|1|A|U|2133
8YLD|1|A|G|2134
*
8YLD|1|A|C|2146
8YLD|1|A|A|2147
8YLD|1|A|U|2148
8YLD|1|A|A|2149
8YLD|1|A|G|2150
*
8YLD|1|A|U|2186
8YLD|1|A|G|2187
8YLD|1|A|A|2188
8YLD|1|A|U|2189
8YLD|1|A|U|2190
8YLD|1|A|U|2191
*
8YLD|1|A|A|2317
8YLD|1|A|U|2318
8YLD|1|A|U|2319
8YLD|1|A|A|2320
8YLD|1|A|A|2321
8YLD|1|A|C|2322
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain D
- Large ribosomal subunit protein uL2A
- Chain p
- Large ribosomal subunit protein eL41A
- Chain r
- Large ribosomal subunit protein eL43A
Coloring options: