J4_8YOO_002

3D structure

PDB id

8YOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with 100 um Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

CAAG*CCCAGCCC*GAC*GGUAG

Length

20 nucleotides

Bulged bases

8YOO|1|L5|G|219

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8YOO|1|L5|C|196
8YOO|1|L5|A|197
8YOO|1|L5|A|198
8YOO|1|L5|G|199
*
8YOO|1|L5|C|215
8YOO|1|L5|C|216
8YOO|1|L5|C|217
8YOO|1|L5|A|218
8YOO|1|L5|G|219
8YOO|1|L5|C|220
8YOO|1|L5|C|221
8YOO|1|L5|C|222
*
8YOO|1|L5|G|226
8YOO|1|L5|A|227
8YOO|1|L5|C|228
*
8YOO|1|L5|G|240
8YOO|1|L5|G|241
8YOO|1|L5|U|242
8YOO|1|L5|A|243
8YOO|1|L5|G|244

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LY

60S ribosomal protein L26