J4_8YOO_007

3D structure

PDB id

8YOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with 100 um Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

GG*UGUGAA*UGGAAAG*UC

Length

17 nucleotides

Bulged bases

8YOO|1|L5|A|2696

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8YOO|1|L5|G|2618
8YOO|1|L5|G|2619
*
8YOO|1|L5|U|2637
8YOO|1|L5|G|2638
8YOO|1|L5|U|2639
8YOO|1|L5|G|2640
8YOO|1|L5|A|2641
8YOO|1|L5|A|2642
*
8YOO|1|L5|U|2692
8YOO|1|L5|G|2693
8YOO|1|L5|G|2694
8YOO|1|L5|A|2695
8YOO|1|L5|A|2696
8YOO|1|L5|A|2697
8YOO|1|L5|G|2698
*
8YOO|1|L5|U|2718
8YOO|1|L5|C|2719

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LR

60S ribosomal protein L19

Chain LU

60S ribosomal protein L22

Chain Lg

60S ribosomal protein L34

Chain Lk

60S ribosomal protein L38