J4_8YP6_001

3D structure

PDB id

8YP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM map of 30S ribosomal subunit in complex with MetAP1c of Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GAGUAACAC*GGC*GUAG*CC

Length

18 nucleotides

Bulged bases

8YP6|1|a|C|117

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8YP6|1|a|G|111
8YP6|1|a|A|112
8YP6|1|a|G|113
8YP6|1|a|U|114
8YP6|1|a|A|115
8YP6|1|a|A|116
8YP6|1|a|C|117
8YP6|1|a|A|118
8YP6|1|a|C|119
*
8YP6|1|a|G|238
8YP6|1|a|G|239
8YP6|1|a|C|240
*
8YP6|1|a|G|286
8YP6|1|a|U|287
8YP6|1|a|A|288
8YP6|1|a|G|289
*
8YP6|1|a|C|311
8YP6|1|a|C|312

Current chains

Chain a

16S rRNA

Nearby chains

Chain p

Small ribosomal subunit protein bS16

Chain q

Small ribosomal subunit protein uS17