J4_8YUO_007

3D structure

PDB id

8YUO (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complexed with P. putida tRNAIle2 at the A-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.25 Å

Loop

Sequence

GGAAG*CGCG*CAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8YUO_007 not in the Motif Atlas

Homologous match to J4_5J7L_019

Geometric discrepancy: 0.0752

The information below is about J4_5J7L_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

8YUO|1|a|G|297
8YUO|1|a|G|298
8YUO|1|a|A|299
8YUO|1|a|A|300
8YUO|1|a|G|301
*
8YUO|1|a|C|316
8YUO|1|a|G|317
8YUO|1|a|C|318
8YUO|1|a|G|319
*
8YUO|1|a|C|323
8YUO|1|a|A|324
8YUO|1|a|G|325
*
8YUO|1|a|C|337
8YUO|1|a|G|338
8YUO|1|a|U|339
8YUO|1|a|A|340
8YUO|1|a|C|341

Current chains

Chain a

23S rRNA

Nearby chains

Chain e

50S ribosomal protein L4

Chain t

50S ribosomal protein L24