J4_8YUP_003
3D structure
- PDB id
- 8YUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosome complexed with P. putida tRNAIle2 and A4 mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.39 Å
Loop
- Sequence
- GCG*CGAAAG*CCGUAAACGAUG*CC
- Length
- 23 nucleotides
- Bulged bases
- 8YUP|1|A|C|576, 8YUP|1|A|A|815
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8YUP_003 not in the Motif Atlas
- Homologous match to J4_5J7L_003
- Geometric discrepancy: 0.0474
- The information below is about J4_5J7L_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.6
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
8YUP|1|A|G|575
8YUP|1|A|C|576
8YUP|1|A|G|577
*
8YUP|1|A|C|764
8YUP|1|A|G|765
8YUP|1|A|A|766
8YUP|1|A|A|767
8YUP|1|A|A|768
8YUP|1|A|G|769
*
8YUP|1|A|C|810
8YUP|1|A|C|811
8YUP|1|A|G|812
8YUP|1|A|U|813
8YUP|1|A|A|814
8YUP|1|A|A|815
8YUP|1|A|A|816
8YUP|1|A|C|817
8YUP|1|A|G|818
8YUP|1|A|A|819
8YUP|1|A|U|820
8YUP|1|A|G|821
*
8YUP|1|A|C|879
8YUP|1|A|C|880
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain H
- 30S ribosomal protein S8
- Chain L
- 30S ribosomal protein S12
- Chain O
- 30S ribosomal protein S15
- Chain Q
- 30S ribosomal protein S17
- Chain U
- 30S ribosomal protein S21
- Chain a
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: