J4_8YUP_005
3D structure
- PDB id
- 8YUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosome complexed with P. putida tRNAIle2 and A4 mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.39 Å
Loop
- Sequence
- AUAG*CAG*UUG(G7M)(3AU)CC*GU
- Length
- 16 nucleotides
- Bulged bases
- 8YUP|1|X|U|8, 8YUP|1|X|3AU|47, 8YUP|1|X|C|48
- QA status
- Modified nucleotides: G7M, 3AU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8YUP_005 not in the Motif Atlas
- Homologous match to J4_7EQJ_002
- Geometric discrepancy: 0.2005
- The information below is about J4_7EQJ_002
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_70449.29
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 54
Unit IDs
8YUP|1|X|A|7
8YUP|1|X|U|8
8YUP|1|X|A|9
8YUP|1|X|G|10
*
8YUP|1|X|C|25
8YUP|1|X|A|26
8YUP|1|X|G|27
*
8YUP|1|X|U|43
8YUP|1|X|U|44
8YUP|1|X|G|45
8YUP|1|X|G7M|46
8YUP|1|X|3AU|47
8YUP|1|X|C|48
8YUP|1|X|C|49
*
8YUP|1|X|G|65
8YUP|1|X|U|66
Current chains
- Chain X
- A-site tRNAIle2
Nearby chains
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain a
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: