J4_8YUP_008
3D structure
- PDB id
- 8YUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosome complexed with P. putida tRNAIle2 and A4 mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.39 Å
Loop
- Sequence
- CAAG*CGAAG*CGAG*CGUUAAG
- Length
- 20 nucleotides
- Bulged bases
- 8YUP|1|a|U|653, 8YUP|1|a|A|654
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8YUP_008 not in the Motif Atlas
- Homologous match to J4_5J7L_020
- Geometric discrepancy: 0.2064
- The information below is about J4_5J7L_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_60168.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
8YUP|1|a|C|601
8YUP|1|a|A|602
8YUP|1|a|A|603
8YUP|1|a|G|604
*
8YUP|1|a|C|624
8YUP|1|a|G|625
8YUP|1|a|A|626
8YUP|1|a|A|627
8YUP|1|a|G|628
*
8YUP|1|a|C|635
8YUP|1|a|G|636
8YUP|1|a|A|637
8YUP|1|a|G|638
*
8YUP|1|a|C|650
8YUP|1|a|G|651
8YUP|1|a|U|652
8YUP|1|a|U|653
8YUP|1|a|A|654
8YUP|1|a|A|655
8YUP|1|a|G|656
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain 2
- 50S ribosomal protein L35
- Chain e
- 50S ribosomal protein L4
- Chain k
- 50S ribosomal protein L15
Coloring options: