3D structure

PDB id
8YUQ (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S ribosome complexed with P. putida tRNAIle2 and dA4 mRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
2.41 Å

Loop

Sequence
GCG*CGAAAG*CCGUAAACGAUG*CC
Length
23 nucleotides
Bulged bases
8YUQ|1|A|C|576, 8YUQ|1|A|A|815
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_8YUQ_003 not in the Motif Atlas
Homologous match to J4_5J7L_003
Geometric discrepancy: 0.0509
The information below is about J4_5J7L_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_61885.6
Basepair signature
cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
Number of instances in this motif group
4

Unit IDs

8YUQ|1|A|G|575
8YUQ|1|A|C|576
8YUQ|1|A|G|577
*
8YUQ|1|A|C|764
8YUQ|1|A|G|765
8YUQ|1|A|A|766
8YUQ|1|A|A|767
8YUQ|1|A|A|768
8YUQ|1|A|G|769
*
8YUQ|1|A|C|810
8YUQ|1|A|C|811
8YUQ|1|A|G|812
8YUQ|1|A|U|813
8YUQ|1|A|A|814
8YUQ|1|A|A|815
8YUQ|1|A|A|816
8YUQ|1|A|C|817
8YUQ|1|A|G|818
8YUQ|1|A|A|819
8YUQ|1|A|U|820
8YUQ|1|A|G|821
*
8YUQ|1|A|C|879
8YUQ|1|A|C|880

Current chains

Chain A
16S rRNA

Nearby chains

Chain H
30S ribosomal protein S8
Chain L
30S ribosomal protein S12
Chain O
30S ribosomal protein S15
Chain Q
30S ribosomal protein S17
Chain U
30S ribosomal protein S21
Chain a
Large subunit ribosomal RNA; LSU rRNA

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.2687 s
Application loaded.