J4_8YUQ_007

3D structure

PDB id

8YUQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complexed with P. putida tRNAIle2 and dA4 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.41 Å

Loop

Sequence

GGAAG*CGCG*CAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8YUQ_007 not in the Motif Atlas

Homologous match to J4_5J7L_019

Geometric discrepancy: 0.0599

The information below is about J4_5J7L_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

8YUQ|1|a|G|297
8YUQ|1|a|G|298
8YUQ|1|a|A|299
8YUQ|1|a|A|300
8YUQ|1|a|G|301
*
8YUQ|1|a|C|316
8YUQ|1|a|G|317
8YUQ|1|a|C|318
8YUQ|1|a|G|319
*
8YUQ|1|a|C|323
8YUQ|1|a|A|324
8YUQ|1|a|G|325
*
8YUQ|1|a|C|337
8YUQ|1|a|G|338
8YUQ|1|a|U|339
8YUQ|1|a|A|340
8YUQ|1|a|C|341

Current chains

Chain a

23S rRNA

Nearby chains

Chain e

50S ribosomal protein L4

Chain t

50S ribosomal protein L24