J4_8YUQ_008

3D structure

PDB id

8YUQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complexed with P. putida tRNAIle2 and dA4 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.41 Å

Loop

Sequence

CAAG*CGAAG*CGAG*CGUUAAG

Length

20 nucleotides

Bulged bases

8YUQ|1|a|A|654

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8YUQ_008 not in the Motif Atlas

Homologous match to J4_5J7L_020

Geometric discrepancy: 0.1946

The information below is about J4_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_60168.1

Basepair signature

cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW

Number of instances in this motif group

2

Unit IDs

8YUQ|1|a|C|601
8YUQ|1|a|A|602
8YUQ|1|a|A|603
8YUQ|1|a|G|604
*
8YUQ|1|a|C|624
8YUQ|1|a|G|625
8YUQ|1|a|A|626
8YUQ|1|a|A|627
8YUQ|1|a|G|628
*
8YUQ|1|a|C|635
8YUQ|1|a|G|636
8YUQ|1|a|A|637
8YUQ|1|a|G|638
*
8YUQ|1|a|C|650
8YUQ|1|a|G|651
8YUQ|1|a|U|652
8YUQ|1|a|U|653
8YUQ|1|a|A|654
8YUQ|1|a|A|655
8YUQ|1|a|G|656

Current chains

Chain a

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L35

Chain e

50S ribosomal protein L4

Chain k

50S ribosomal protein L15