J4_8YUQ_010

3D structure

PDB id

8YUQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complexed with P. putida tRNAIle2 and dA4 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.41 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

8YUQ|1|a|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8YUQ_010 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.0448

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8YUQ|1|a|G|1310
8YUQ|1|a|G|1311
8YUQ|1|a|U|1312
8YUQ|1|a|U|1313
8YUQ|1|a|C|1314
*
8YUQ|1|a|G|1338
8YUQ|1|a|G|1339
8YUQ|1|a|U|1340
8YUQ|1|a|G|1341
8YUQ|1|a|A|1342
8YUQ|1|a|G|1343
*
8YUQ|1|a|C|1404
8YUQ|1|a|U|1405
*
8YUQ|1|a|A|1597
8YUQ|1|a|A|1598
8YUQ|1|a|U|1599
8YUQ|1|a|C|1600
8YUQ|1|a|G|1601
8YUQ|1|a|U|1602
8YUQ|1|a|A|1603
8YUQ|1|a|C|1604

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L34

Chain s

50S ribosomal protein L23