3D structure

PDB id
8YUQ (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S ribosome complexed with P. putida tRNAIle2 and dA4 mRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
2.41 Å

Loop

Sequence
CU(2MG)*CG*CCUAAGGUAG*CGAAUG
Length
21 nucleotides
Bulged bases
8YUQ|1|a|U|1971
QA status
Modified nucleotides: 2MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_8YUQ_014 not in the Motif Atlas
Homologous match to J4_9DFE_008
Geometric discrepancy: 0.1058
The information below is about J4_9DFE_008
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_93343.1
Basepair signature
cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F
Number of instances in this motif group
4

Unit IDs

8YUQ|1|a|C|1833
8YUQ|1|a|U|1834
8YUQ|1|a|2MG|1835
*
8YUQ|1|a|C|1905
8YUQ|1|a|G|1906
*
8YUQ|1|a|C|1924
8YUQ|1|a|C|1925
8YUQ|1|a|U|1926
8YUQ|1|a|A|1927
8YUQ|1|a|A|1928
8YUQ|1|a|G|1929
8YUQ|1|a|G|1930
8YUQ|1|a|U|1931
8YUQ|1|a|A|1932
8YUQ|1|a|G|1933
*
8YUQ|1|a|C|1967
8YUQ|1|a|G|1968
8YUQ|1|a|A|1969
8YUQ|1|a|A|1970
8YUQ|1|a|U|1971
8YUQ|1|a|G|1972

Current chains

Chain a
23S rRNA

Nearby chains

Chain A
Small subunit ribosomal RNA; SSU rRNA
Chain V
Transfer RNA; tRNA
Chain c
50S ribosomal protein L2

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.2178 s
Application loaded.