J4_8YUR_010

3D structure

PDB id

8YUR (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complexed with P. putida tRNAIle2 and Am4 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

8YUR|1|a|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8YUR_010 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.0529

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8YUR|1|a|G|1310
8YUR|1|a|G|1311
8YUR|1|a|U|1312
8YUR|1|a|U|1313
8YUR|1|a|C|1314
*
8YUR|1|a|G|1338
8YUR|1|a|G|1339
8YUR|1|a|U|1340
8YUR|1|a|G|1341
8YUR|1|a|A|1342
8YUR|1|a|G|1343
*
8YUR|1|a|C|1404
8YUR|1|a|U|1405
*
8YUR|1|a|A|1597
8YUR|1|a|A|1598
8YUR|1|a|U|1599
8YUR|1|a|C|1600
8YUR|1|a|G|1601
8YUR|1|a|U|1602
8YUR|1|a|A|1603
8YUR|1|a|C|1604

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L34

Chain s

50S ribosomal protein L23