J4_8ZDD_001
3D structure
- PDB id
- 8ZDD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human ubiquitylated pre-40S ribosome with RIOK3 (without NOB1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- CAUUAAAUC*GCC*GUGAC*GG
- Length
- 19 nucleotides
- Bulged bases
- 8ZDD|1|2|G|407
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8ZDD_001 not in the Motif Atlas
- Homologous match to J4_8C3A_021
- Geometric discrepancy: 0.1218
- The information below is about J4_8C3A_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_78231.1
- Basepair signature
- cWW-cSH-tHS-cWW-F-F-tHW-F-cWW-F-F-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
8ZDD|1|2|C|98
8ZDD|1|2|A|99
8ZDD|1|2|U|100
8ZDD|1|2|U|101
8ZDD|1|2|A|102
8ZDD|1|2|A|103
8ZDD|1|2|A|104
8ZDD|1|2|U|105
8ZDD|1|2|C|106
*
8ZDD|1|2|G|355
8ZDD|1|2|C|356
8ZDD|1|2|C|357
*
8ZDD|1|2|G|405
8ZDD|1|2|U|406
8ZDD|1|2|G|407
8ZDD|1|2|A|408
8ZDD|1|2|C|409
*
8ZDD|1|2|G|431
8ZDD|1|2|G|432
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain E
- Small ribosomal subunit protein eS4, X isoform
- Chain I
- Small ribosomal subunit protein eS8
- Chain L
- Small ribosomal subunit protein uS17
- Chain X
- Small ribosomal subunit protein uS12
- Chain u
- Pre-rRNA-processing protein TSR1 homolog
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