J4_8ZFF_004
3D structure
- PDB id
- 8ZFF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Bacterial Ribosome without hypoxia-induced rRNA modifications
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.59 Å
Loop
- Sequence
- G(4SU)GG*CGU*AAGAUCG*CC
- Length
- 16 nucleotides
- Bulged bases
- 8ZFF|1|Z|4SU|8
- QA status
- Modified nucleotides: 4SU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8ZFF_004 not in the Motif Atlas
- Homologous match to J4_7VNV_001
- Geometric discrepancy: 0.1593
- The information below is about J4_7VNV_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_95067.1
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 48
Unit IDs
8ZFF|1|Z|G|7
8ZFF|1|Z|4SU|8
8ZFF|1|Z|G|9
8ZFF|1|Z|G|10
*
8ZFF|1|Z|C|26
8ZFF|1|Z|G|27
8ZFF|1|Z|U|28
*
8ZFF|1|Z|A|44
8ZFF|1|Z|A|45
8ZFF|1|Z|G|46
8ZFF|1|Z|A|47
8ZFF|1|Z|U|48
8ZFF|1|Z|C|49
8ZFF|1|Z|G|50
*
8ZFF|1|Z|C|66
8ZFF|1|Z|C|67
Current chains
- Chain Z
- P-site tRNA-fMet
Nearby chains
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain M
- Small ribosomal subunit protein uS13
- Chain a
- Large subunit ribosomal RNA; LSU rRNA
- Chain l
- Large ribosomal subunit protein uL16
Coloring options: