J4_8ZFI_002

3D structure

PDB id

8ZFI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAG*CAUAACG*CCAAAGAGGG*CUCUUGC

Length

27 nucleotides

Bulged bases

8ZFI|1|A|C|183, 8ZFI|1|A|A|197

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8ZFI|1|A|G|142
8ZFI|1|A|A|143
8ZFI|1|A|G|144
*
8ZFI|1|A|C|178
8ZFI|1|A|A|179
8ZFI|1|A|U|180
8ZFI|1|A|A|181
8ZFI|1|A|A|182
8ZFI|1|A|C|183
8ZFI|1|A|G|184
*
8ZFI|1|A|C|193
8ZFI|1|A|C|194
8ZFI|1|A|A|195
8ZFI|1|A|A|196
8ZFI|1|A|A|197
8ZFI|1|A|G|198
8ZFI|1|A|A|199
8ZFI|1|A|G|200
8ZFI|1|A|G|201
8ZFI|1|A|G|202
*
8ZFI|1|A|C|215
8ZFI|1|A|U|216
8ZFI|1|A|C|217
8ZFI|1|A|U|218
8ZFI|1|A|U|219
8ZFI|1|A|G|220
8ZFI|1|A|C|221

Current chains

Chain A

16S rRNA

Nearby chains

Chain T

30S ribosomal protein S20