J4_8ZFI_004
3D structure
- PDB id
- 8ZFI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GGGAAUAG*CAC*GGGGUCG*UUUCCC
- Length
- 24 nucleotides
- Bulged bases
- 8ZFI|1|X|U|8, 8ZFI|1|X|U|47, 8ZFI|1|X|C|48
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8ZFI|1|X|G|3
8ZFI|1|X|G|4
8ZFI|1|X|G|5
8ZFI|1|X|A|6
8ZFI|1|X|A|7
8ZFI|1|X|U|8
8ZFI|1|X|A|9
8ZFI|1|X|G|10
*
8ZFI|1|X|C|25
8ZFI|1|X|A|26
8ZFI|1|X|C|27
*
8ZFI|1|X|G|43
8ZFI|1|X|G|44
8ZFI|1|X|G|45
8ZFI|1|X|G|46
8ZFI|1|X|U|47
8ZFI|1|X|C|48
8ZFI|1|X|G|49
*
8ZFI|1|X|U|65
8ZFI|1|X|U|66
8ZFI|1|X|U|67
8ZFI|1|X|C|68
8ZFI|1|X|C|69
8ZFI|1|X|C|70
Current chains
- Chain X
- E-site tRNA
Nearby chains
- Chain 5
- 50S ribosomal protein L33
- Chain G
- 30S ribosomal protein S7
- Chain b
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: