J4_8ZFI_005
3D structure
- PDB id
- 8ZFI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GAUUGG*CAC*GGGGUCG*UAUC
- Length
- 20 nucleotides
- Bulged bases
- 8ZFI|1|Y|U|8, 8ZFI|1|Y|U|48, 8ZFI|1|Y|C|49
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8ZFI|1|Y|G|5
8ZFI|1|Y|A|6
8ZFI|1|Y|U|7
8ZFI|1|Y|U|8
8ZFI|1|Y|G|9
8ZFI|1|Y|G|10
*
8ZFI|1|Y|C|26
8ZFI|1|Y|A|27
8ZFI|1|Y|C|28
*
8ZFI|1|Y|G|44
8ZFI|1|Y|G|45
8ZFI|1|Y|G|46
8ZFI|1|Y|G|47
8ZFI|1|Y|U|48
8ZFI|1|Y|C|49
8ZFI|1|Y|G|50
*
8ZFI|1|Y|U|66
8ZFI|1|Y|A|67
8ZFI|1|Y|U|68
8ZFI|1|Y|C|69
Current chains
- Chain Y
- P-site tRNA (Chain-Y), A-site tRNA-PRO (Chain-Z)
Nearby chains
- Chain M
- 30S ribosomal protein S13
- Chain Z
- Transfer RNA; tRNA
- Chain b
- Large subunit ribosomal RNA; LSU rRNA
- Chain n
- 50S ribosomal protein L16
Coloring options: