J4_8ZFI_015
3D structure
- PDB id
- 8ZFI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CUG*CG*CCUAAGGUAG*CGAAUG
- Length
- 21 nucleotides
- Bulged bases
- 8ZFI|1|b|U|1971
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8ZFI|1|b|C|1833
8ZFI|1|b|U|1834
8ZFI|1|b|G|1835
*
8ZFI|1|b|C|1905
8ZFI|1|b|G|1906
*
8ZFI|1|b|C|1924
8ZFI|1|b|C|1925
8ZFI|1|b|U|1926
8ZFI|1|b|A|1927
8ZFI|1|b|A|1928
8ZFI|1|b|G|1929
8ZFI|1|b|G|1930
8ZFI|1|b|U|1931
8ZFI|1|b|A|1932
8ZFI|1|b|G|1933
*
8ZFI|1|b|C|1967
8ZFI|1|b|G|1968
8ZFI|1|b|A|1969
8ZFI|1|b|A|1970
8ZFI|1|b|U|1971
8ZFI|1|b|G|1972
Current chains
- Chain b
- RNA (2903-MER)
Nearby chains
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain Y
- Transfer RNA; tRNA
- Chain c
- 50S ribosomal protein L2
Coloring options: