J4_8ZTU_004
3D structure
- PDB id
- 8ZTU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome arrested by PepNL
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GUAG*UAC*GGGGUCG*UC
- Length
- 16 nucleotides
- Bulged bases
- 8ZTU|1|Y|U|8, 8ZTU|1|Y|U|47, 8ZTU|1|Y|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8ZTU_004 not in the Motif Atlas
- Homologous match to J4_7VNV_001
- Geometric discrepancy: 0.2014
- The information below is about J4_7VNV_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_58311.1
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 30
Unit IDs
8ZTU|1|Y|G|7
8ZTU|1|Y|U|8
8ZTU|1|Y|A|9
8ZTU|1|Y|G|10
*
8ZTU|1|Y|U|25
8ZTU|1|Y|A|26
8ZTU|1|Y|C|27
*
8ZTU|1|Y|G|43
8ZTU|1|Y|G|44
8ZTU|1|Y|G|45
8ZTU|1|Y|G|46
8ZTU|1|Y|U|47
8ZTU|1|Y|C|48
8ZTU|1|Y|G|49
*
8ZTU|1|Y|U|65
8ZTU|1|Y|C|66
Current chains
- Chain Y
- P-tRNA
Nearby chains
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain M
- 30S ribosomal protein S13
- Chain a
- Large subunit ribosomal RNA; LSU rRNA
- Chain l
- 50S ribosomal protein L16
Coloring options: