J4_8ZTU_009

3D structure

PDB id

8ZTU (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome arrested by PepNL

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

8ZTU|1|a|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8ZTU_009 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.0641

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8ZTU|1|a|G|1310
8ZTU|1|a|G|1311
8ZTU|1|a|U|1312
8ZTU|1|a|U|1313
8ZTU|1|a|C|1314
*
8ZTU|1|a|G|1338
8ZTU|1|a|G|1339
8ZTU|1|a|U|1340
8ZTU|1|a|G|1341
8ZTU|1|a|A|1342
8ZTU|1|a|G|1343
*
8ZTU|1|a|C|1404
8ZTU|1|a|U|1405
*
8ZTU|1|a|A|1597
8ZTU|1|a|A|1598
8ZTU|1|a|U|1599
8ZTU|1|a|C|1600
8ZTU|1|a|G|1601
8ZTU|1|a|U|1602
8ZTU|1|a|A|1603
8ZTU|1|a|C|1604

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L34

Chain s

50S ribosomal protein L23