J4_8ZTV_004
3D structure
- PDB id
- 8ZTV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome arrested by PepNL with RF2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GUAG*UAC*GGGGUCG*UC
- Length
- 16 nucleotides
- Bulged bases
- 8ZTV|1|Y|U|8, 8ZTV|1|Y|U|48, 8ZTV|1|Y|C|49
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8ZTV_004 not in the Motif Atlas
- Homologous match to J4_7VNV_001
- Geometric discrepancy: 0.2033
- The information below is about J4_7VNV_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_70449.29
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 54
Unit IDs
8ZTV|1|Y|G|7
8ZTV|1|Y|U|8
8ZTV|1|Y|A|9
8ZTV|1|Y|G|10
*
8ZTV|1|Y|U|26
8ZTV|1|Y|A|27
8ZTV|1|Y|C|28
*
8ZTV|1|Y|G|44
8ZTV|1|Y|G|45
8ZTV|1|Y|G|46
8ZTV|1|Y|G|47
8ZTV|1|Y|U|48
8ZTV|1|Y|C|49
8ZTV|1|Y|G|50
*
8ZTV|1|Y|U|66
8ZTV|1|Y|C|67
Current chains
- Chain Y
- RNA (73-MER)
Nearby chains
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain M
- 30S ribosomal protein S13
- Chain V
- Peptide chain release factor 2
- Chain a
- Large subunit ribosomal RNA; LSU rRNA
- Chain l
- 50S ribosomal protein L16
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