3D structure

PDB id
9AX7 (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S initiation complex (tRNA-fMet M1 + CUG start codon)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.63 Å

Loop

Sequence
GCG*CGAAAG*CCGUAAACGAUG*CC
Length
23 nucleotides
Bulged bases
9AX7|1|A|C|576, 9AX7|1|A|A|815, 9AX7|1|A|C|817, 9AX7|1|A|A|819
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_9AX7_003 not in the Motif Atlas
Homologous match to J4_5J7L_003
Geometric discrepancy: 0.0552
The information below is about J4_5J7L_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_61885.6
Basepair signature
cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
Number of instances in this motif group
4

Unit IDs

9AX7|1|A|G|575
9AX7|1|A|C|576
9AX7|1|A|G|577
*
9AX7|1|A|C|764
9AX7|1|A|G|765
9AX7|1|A|A|766
9AX7|1|A|A|767
9AX7|1|A|A|768
9AX7|1|A|G|769
*
9AX7|1|A|C|810
9AX7|1|A|C|811
9AX7|1|A|G|812
9AX7|1|A|U|813
9AX7|1|A|A|814
9AX7|1|A|A|815
9AX7|1|A|A|816
9AX7|1|A|C|817
9AX7|1|A|G|818
9AX7|1|A|A|819
9AX7|1|A|U|820
9AX7|1|A|G|821
*
9AX7|1|A|C|879
9AX7|1|A|C|880

Current chains

Chain A
16S ribosomal RNA

Nearby chains

Chain H
30S ribosomal protein S8
Chain L
30S ribosomal protein S12
Chain O
30S ribosomal protein S15
Chain Q
30S ribosomal protein S17
Chain U
30S ribosomal protein S21
Chain a
Large subunit ribosomal RNA; LSU rRNA

Coloring options:


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