J4_9AX7_004
3D structure
- PDB id
- 9AX7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S initiation complex (tRNA-fMet M1 + CUG start codon)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.63 Å
Loop
- Sequence
- GUGG*CGU*AAGGUCG*CC
- Length
- 16 nucleotides
- Bulged bases
- 9AX7|1|Z|U|8, 9AX7|1|Z|U|47, 9AX7|1|Z|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9AX7_004 not in the Motif Atlas
- Homologous match to J4_9DFC_015
- Geometric discrepancy: 0.2034
- The information below is about J4_9DFC_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_70449.28
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 55
Unit IDs
9AX7|1|Z|G|7
9AX7|1|Z|U|8
9AX7|1|Z|G|9
9AX7|1|Z|G|10
*
9AX7|1|Z|C|25
9AX7|1|Z|G|26
9AX7|1|Z|U|27
*
9AX7|1|Z|A|43
9AX7|1|Z|A|44
9AX7|1|Z|G|45
9AX7|1|Z|G|46
9AX7|1|Z|U|47
9AX7|1|Z|C|48
9AX7|1|Z|G|49
*
9AX7|1|Z|C|65
9AX7|1|Z|C|66
Current chains
- Chain Z
- P-site tRNA-fMet M1
Nearby chains
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain M
- 30S ribosomal protein S13
- Chain a
- Large subunit ribosomal RNA; LSU rRNA
- Chain l
- 50S ribosomal protein L16
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