J4_9AX7_006

3D structure

PDB id

9AX7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex (tRNA-fMet M1 + CUG start codon)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

GGAAG*CGCG*CAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9AX7_006 not in the Motif Atlas

Homologous match to J4_5J7L_019

Geometric discrepancy: 0.0619

The information below is about J4_5J7L_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

9AX7|1|a|G|297
9AX7|1|a|G|298
9AX7|1|a|A|299
9AX7|1|a|A|300
9AX7|1|a|G|301
*
9AX7|1|a|C|316
9AX7|1|a|G|317
9AX7|1|a|C|318
9AX7|1|a|G|319
*
9AX7|1|a|C|323
9AX7|1|a|A|324
9AX7|1|a|G|325
*
9AX7|1|a|C|337
9AX7|1|a|G|338
9AX7|1|a|U|339
9AX7|1|a|A|340
9AX7|1|a|C|341

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain e

50S ribosomal protein L4

Chain t

50S ribosomal protein L24