J4_9AX8_005

3D structure

PDB id

9AX8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex (tRNA-fMet M1, initiation factor 2 + CUG start codon)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

9AX8|1|A|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9AX8_005 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.0706

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

9AX8|1|A|G|1310
9AX8|1|A|G|1311
9AX8|1|A|U|1312
9AX8|1|A|U|1313
9AX8|1|A|C|1314
*
9AX8|1|A|G|1338
9AX8|1|A|G|1339
9AX8|1|A|U|1340
9AX8|1|A|G|1341
9AX8|1|A|A|1342
9AX8|1|A|G|1343
*
9AX8|1|A|C|1404
9AX8|1|A|U|1405
*
9AX8|1|A|A|1597
9AX8|1|A|A|1598
9AX8|1|A|U|1599
9AX8|1|A|C|1600
9AX8|1|A|G|1601
9AX8|1|A|U|1602
9AX8|1|A|A|1603
9AX8|1|A|C|1604

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 7

50S ribosomal protein L34

Chain T

50S ribosomal protein L23