J4_9AX8_015
3D structure
- PDB id
- 9AX8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S initiation complex (tRNA-fMet M1, initiation factor 2 + CUG start codon)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- GUGG*CGU*AAGAUCG*CC
- Length
- 16 nucleotides
- Bulged bases
- 9AX8|1|y|U|7, 9AX8|1|y|U|47, 9AX8|1|y|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9AX8_015 not in the Motif Atlas
- Homologous match to J4_7YSE_001
- Geometric discrepancy: 0.3031
- The information below is about J4_7YSE_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_70449.29
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 54
Unit IDs
9AX8|1|y|G|6
9AX8|1|y|U|7
9AX8|1|y|G|8
9AX8|1|y|G|9
*
9AX8|1|y|C|25
9AX8|1|y|G|26
9AX8|1|y|U|27
*
9AX8|1|y|A|43
9AX8|1|y|A|44
9AX8|1|y|G|45
9AX8|1|y|A|46
9AX8|1|y|U|47
9AX8|1|y|C|48
9AX8|1|y|G|49
*
9AX8|1|y|C|65
9AX8|1|y|C|66
Current chains
- Chain y
- P-site tRNA-fMet M1
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain F
- 50S ribosomal protein L5
- Chain a
- Small subunit ribosomal RNA; SSU rRNA
- Chain m
- 30S ribosomal protein S13
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