J4_9AZS_001
3D structure
- PDB id
- 9AZS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human Post-eEF1A-AT-P-E state 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GUAG*CGU*AAGGUCC*GC
- Length
- 16 nucleotides
- Bulged bases
- 9AZS|1|AT|U|8, 9AZS|1|AT|U|48, 9AZS|1|AT|C|49
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9AZS_001 not in the Motif Atlas
- Homologous match to J4_5HR6_001
- Geometric discrepancy: 0.2563
- The information below is about J4_5HR6_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_95067.1
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 48
Unit IDs
9AZS|1|AT|G|7
9AZS|1|AT|U|8
9AZS|1|AT|A|9
9AZS|1|AT|G|10
*
9AZS|1|AT|C|26
9AZS|1|AT|G|27
9AZS|1|AT|U|28
*
9AZS|1|AT|A|44
9AZS|1|AT|A|45
9AZS|1|AT|G|46
9AZS|1|AT|G|47
9AZS|1|AT|U|48
9AZS|1|AT|C|49
9AZS|1|AT|C|50
*
9AZS|1|AT|G|66
9AZS|1|AT|C|67
Current chains
- Chain AT
- A/T site tRNA
Nearby chains
- Chain CF
- Elongation factor 1-alpha 1
- Chain L5
- Large subunit ribosomal RNA; LSU rRNA
- Chain Se
- Small ribosomal subunit protein eS30
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